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Cherimoya
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Cherimoya

Getting Started

  • Installation
  • Quickstart
  • Glossary

User Guide

  • Architecture
  • Benchmarks
  • Troubleshooting and FAQ
  • Development
  • Changelog

Command-Line Interface

  • CLI Pipeline Walkthrough
  • CLI Reference
  • Recipe: TF ChIP-seq
  • Recipe: ATAC-seq
  • Recipe: DNase-seq
  • Recipe: Differential / Conditional Analysis

Python API

  • Python API Tutorial
  • Attribution and Motif Analysis
  • Variant Effect Prediction
  • Saving and Loading Models

API Reference

  • cherimoya.cherimoya
  • cherimoya.cheri
  • cherimoya.io
  • Losses
  • Performance Metrics
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